J5_4U20_017

3D structure

PDB id

4U20 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to flopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

4U20|1|DA|A|2062, 4U20|1|DA|A|2448, 4U20|1|DA|U|2449, 4U20|1|DA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U20|1|DA|G|2057
4U20|1|DA|A|2058
4U20|1|DA|A|2059
4U20|1|DA|A|2060
4U20|1|DA|G|2061
4U20|1|DA|A|2062
4U20|1|DA|C|2063
4U20|1|DA|C|2064
*
4U20|1|DA|G|2446
4U20|1|DA|G|2447
4U20|1|DA|A|2448
4U20|1|DA|U|2449
4U20|1|DA|A|2450
4U20|1|DA|A|2451
4U20|1|DA|C|2452
4U20|1|DA|A|2453
*
4U20|1|DA|U|2500
4U20|1|DA|C|2501
4U20|1|DA|G|2502
4U20|1|DA|A|2503
4U20|1|DA|U|2504
4U20|1|DA|G|2505
4U20|1|DA|U|2506
*
4U20|1|DA|G|2583
4U20|1|DA|U|2584
4U20|1|DA|U|2585
4U20|1|DA|U|2586
4U20|1|DA|A|2587
4U20|1|DA|G|2588
*
4U20|1|DA|C|2606
4U20|1|DA|G|2607
4U20|1|DA|G|2608
4U20|1|DA|U|2609
4U20|1|DA|C|2610
4U20|1|DA|C|2611

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D0

50S ribosomal protein L32

Chain DC

50S ribosomal protein L2

Chain DD

50S ribosomal protein L3

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15

Chain DM

50S ribosomal protein L16

Chain DS

50S ribosomal protein L22