J5_4U24_013

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUGAAGG*CCGAAUG*CA*UAU*AGG

Length

24 nucleotides

Bulged bases

4U24|1|DA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U24|1|DA|C|47
4U24|1|DA|G|48
4U24|1|DA|A|49
4U24|1|DA|U|50
4U24|1|DA|G|51
4U24|1|DA|A|52
4U24|1|DA|A|53
4U24|1|DA|G|54
4U24|1|DA|G|55
*
4U24|1|DA|C|115
4U24|1|DA|C|116
4U24|1|DA|G|117
4U24|1|DA|A|118
4U24|1|DA|A|119
4U24|1|DA|U|120
4U24|1|DA|G|121
*
4U24|1|DA|C|130
4U24|1|DA|A|131
*
4U24|1|DA|U|148
4U24|1|DA|A|149
4U24|1|DA|U|150
*
4U24|1|DA|A|176
4U24|1|DA|G|177
4U24|1|DA|G|178

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D2

50S ribosomal protein L34