J5_4U24_019

3D structure

PDB id

4U24 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAAAGACC*GGAUAACA*UCGAUGU*GUUUAG*CGGUCC

Length

35 nucleotides

Bulged bases

4U24|1|BA|A|2062, 4U24|1|BA|A|2448, 4U24|1|BA|U|2449, 4U24|1|BA|U|2609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U24|1|BA|G|2057
4U24|1|BA|A|2058
4U24|1|BA|A|2059
4U24|1|BA|A|2060
4U24|1|BA|G|2061
4U24|1|BA|A|2062
4U24|1|BA|C|2063
4U24|1|BA|C|2064
*
4U24|1|BA|G|2446
4U24|1|BA|G|2447
4U24|1|BA|A|2448
4U24|1|BA|U|2449
4U24|1|BA|A|2450
4U24|1|BA|A|2451
4U24|1|BA|C|2452
4U24|1|BA|A|2453
*
4U24|1|BA|U|2500
4U24|1|BA|C|2501
4U24|1|BA|G|2502
4U24|1|BA|A|2503
4U24|1|BA|U|2504
4U24|1|BA|G|2505
4U24|1|BA|U|2506
*
4U24|1|BA|G|2583
4U24|1|BA|U|2584
4U24|1|BA|U|2585
4U24|1|BA|U|2586
4U24|1|BA|A|2587
4U24|1|BA|G|2588
*
4U24|1|BA|C|2606
4U24|1|BA|G|2607
4U24|1|BA|G|2608
4U24|1|BA|U|2609
4U24|1|BA|C|2610
4U24|1|BA|C|2611

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BC

50S ribosomal protein L2

Chain BD

50S ribosomal protein L3

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15

Chain BM

50S ribosomal protein L16

Chain BS

50S ribosomal protein L22