J5_4U25_002

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4U25_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.053

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4U25|1|AA|C|36
4U25|1|AA|U|37
4U25|1|AA|G|38
4U25|1|AA|G|39
*
4U25|1|AA|C|403
4U25|1|AA|G|404
4U25|1|AA|U|405
4U25|1|AA|G|406
*
4U25|1|AA|C|436
4U25|1|AA|U|437
4U25|1|AA|U|438
4U25|1|AA|U|439
4U25|1|AA|C|440
4U25|1|AA|A|441
4U25|1|AA|G|442
*
4U25|1|AA|C|492
4U25|1|AA|A|493
4U25|1|AA|G|494
4U25|1|AA|A|495
4U25|1|AA|A|496
4U25|1|AA|G|497
4U25|1|AA|A|498
4U25|1|AA|A|499
4U25|1|AA|G|500
*
4U25|1|AA|C|545
4U25|1|AA|A|546
4U25|1|AA|A|547
4U25|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12