J5_4U25_004

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

4U25|1|BA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4U25_004 not in the Motif Atlas

Homologous match to J5_5J7L_013

Geometric discrepancy: 0.0412

The information below is about J5_5J7L_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4U25|1|BA|C|47
4U25|1|BA|G|48
4U25|1|BA|A|49
4U25|1|BA|U|50
4U25|1|BA|G|51
4U25|1|BA|A|52
4U25|1|BA|A|53
4U25|1|BA|G|54
*
4U25|1|BA|C|116
4U25|1|BA|G|117
4U25|1|BA|A|118
4U25|1|BA|A|119
4U25|1|BA|U|120
4U25|1|BA|G|121
*
4U25|1|BA|C|130
4U25|1|BA|A|131
*
4U25|1|BA|U|148
4U25|1|BA|A|149
4U25|1|BA|U|150
*
4U25|1|BA|A|176
4U25|1|BA|G|177
4U25|1|BA|G|178

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L34