J5_4U25_012
3D structure
- PDB id
- 4U25 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the E. coli ribosome bound to virginiamycin M1.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 4U25|1|CA|A|60, 4U25|1|CA|A|109, 4U25|1|CA|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4U25_012 not in the Motif Atlas
- Homologous match to J5_5J7L_003
- Geometric discrepancy: 0.0704
- The information below is about J5_5J7L_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
4U25|1|CA|C|58
4U25|1|CA|A|59
4U25|1|CA|A|60
4U25|1|CA|G|61
*
4U25|1|CA|C|106
4U25|1|CA|G|107
4U25|1|CA|G|108
4U25|1|CA|A|109
4U25|1|CA|C|110
4U25|1|CA|G|111
4U25|1|CA|G|112
4U25|1|CA|G|113
*
4U25|1|CA|C|314
4U25|1|CA|A|315
4U25|1|CA|C|316
*
4U25|1|CA|G|337
4U25|1|CA|A|338
4U25|1|CA|C|339
*
4U25|1|CA|G|350
4U25|1|CA|G|351
4U25|1|CA|C|352
4U25|1|CA|A|353
4U25|1|CA|G|354
Current chains
- Chain CA
- 16S rRNA
Nearby chains
- Chain BH
- 50S ribosomal protein L9
- Chain CP
- 30S ribosomal protein S16
- Chain CT
- 30S ribosomal protein S20
- Chain DK
- 50S ribosomal protein L14
- Chain DP
- 50S ribosomal protein L19
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