J5_4U25_015

3D structure

PDB id

4U25 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to virginiamycin M1.

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGACUUA*UAGAC*GUUC*GC*GCGAAUG

Length

25 nucleotides

Bulged bases

4U25|1|DA|U|1255

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U25|1|DA|C|584
4U25|1|DA|G|585
4U25|1|DA|A|586
4U25|1|DA|C|587
4U25|1|DA|U|588
4U25|1|DA|U|589
4U25|1|DA|A|590
*
4U25|1|DA|U|667
4U25|1|DA|A|668
4U25|1|DA|G|669
4U25|1|DA|A|670
4U25|1|DA|C|671
*
4U25|1|DA|G|809
4U25|1|DA|U|810
4U25|1|DA|U|811
4U25|1|DA|C|812
*
4U25|1|DA|G|1195
4U25|1|DA|C|1196
*
4U25|1|DA|G|1250
4U25|1|DA|C|1251
4U25|1|DA|G|1252
4U25|1|DA|A|1253
4U25|1|DA|A|1254
4U25|1|DA|U|1255
4U25|1|DA|G|1256

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15

Chain DQ

50S ribosomal protein L20

Chain DR

50S ribosomal protein L21