J5_4U26_002

3D structure

PDB id

4U26 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli ribosome bound to dalfopristin and quinupristin.

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4U26_002 not in the Motif Atlas

Homologous match to J5_5J7L_002

Geometric discrepancy: 0.0539

The information below is about J5_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_67416.1

Basepair signature

cWW-F-F-F-cWW-tHW-F-tHW-tSS-cWW-cHW-cWW-F-cWW-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4U26|1|AA|C|36
4U26|1|AA|U|37
4U26|1|AA|G|38
4U26|1|AA|G|39
*
4U26|1|AA|C|403
4U26|1|AA|G|404
4U26|1|AA|U|405
4U26|1|AA|G|406
*
4U26|1|AA|C|436
4U26|1|AA|U|437
4U26|1|AA|U|438
4U26|1|AA|U|439
4U26|1|AA|C|440
4U26|1|AA|A|441
4U26|1|AA|G|442
*
4U26|1|AA|C|492
4U26|1|AA|A|493
4U26|1|AA|G|494
4U26|1|AA|A|495
4U26|1|AA|A|496
4U26|1|AA|G|497
4U26|1|AA|A|498
4U26|1|AA|A|499
4U26|1|AA|G|500
*
4U26|1|AA|C|545
4U26|1|AA|A|546
4U26|1|AA|A|547
4U26|1|AA|G|548

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain AL

30S ribosomal protein S12