3D structure

PDB id
4U3M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Anisomycin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU
Length
44 nucleotides
Bulged bases
4U3M|1|2|U|128, 4U3M|1|2|U|132, 4U3M|1|2|C|136, 4U3M|1|2|U|137, 4U3M|1|2|A|140, 4U3M|1|2|U|178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4U3M|1|2|A|124
4U3M|1|2|U|125
4U3M|1|2|A|126
4U3M|1|2|G|127
4U3M|1|2|U|128
4U3M|1|2|U|129
4U3M|1|2|C|130
4U3M|1|2|C|131
4U3M|1|2|U|132
4U3M|1|2|U|133
4U3M|1|2|U|134
4U3M|1|2|A|135
4U3M|1|2|C|136
4U3M|1|2|U|137
4U3M|1|2|A|138
4U3M|1|2|C|139
4U3M|1|2|A|140
4U3M|1|2|U|141
4U3M|1|2|G|142
4U3M|1|2|G|143
*
4U3M|1|2|C|172
4U3M|1|2|A|173
4U3M|1|2|U|174
4U3M|1|2|G|175
4U3M|1|2|C|176
4U3M|1|2|U|177
4U3M|1|2|U|178
4U3M|1|2|A|179
4U3M|1|2|A|180
4U3M|1|2|A|181
4U3M|1|2|A|182
*
4U3M|1|2|U|203
4U3M|1|2|G|204
*
4U3M|1|2|C|263
4U3M|1|2|G|264
4U3M|1|2|A|265
4U3M|1|2|A|266
4U3M|1|2|U|267
*
4U3M|1|2|A|288
4U3M|1|2|U|289
4U3M|1|2|G|290
4U3M|1|2|G|291
4U3M|1|2|U|292
4U3M|1|2|U|293

Current chains

Chain 2
18S rRNA

Nearby chains

Chain S4
40S ribosomal protein S4-A
Chain S6
40S ribosomal protein S6-A
Chain S8
40S ribosomal protein S8-A

Coloring options:

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