J5_4U3M_010

3D structure

PDB id

4U3M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Anisomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

4U3M|1|2|U|128, 4U3M|1|2|U|132, 4U3M|1|2|C|136, 4U3M|1|2|U|137, 4U3M|1|2|A|140, 4U3M|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U3M|1|2|A|124
4U3M|1|2|U|125
4U3M|1|2|A|126
4U3M|1|2|G|127
4U3M|1|2|U|128
4U3M|1|2|U|129
4U3M|1|2|C|130
4U3M|1|2|C|131
4U3M|1|2|U|132
4U3M|1|2|U|133
4U3M|1|2|U|134
4U3M|1|2|A|135
4U3M|1|2|C|136
4U3M|1|2|U|137
4U3M|1|2|A|138
4U3M|1|2|C|139
4U3M|1|2|A|140
4U3M|1|2|U|141
4U3M|1|2|G|142
4U3M|1|2|G|143
*
4U3M|1|2|C|172
4U3M|1|2|A|173
4U3M|1|2|U|174
4U3M|1|2|G|175
4U3M|1|2|C|176
4U3M|1|2|U|177
4U3M|1|2|U|178
4U3M|1|2|A|179
4U3M|1|2|A|180
4U3M|1|2|A|181
4U3M|1|2|A|182
*
4U3M|1|2|U|203
4U3M|1|2|G|204
*
4U3M|1|2|C|263
4U3M|1|2|G|264
4U3M|1|2|A|265
4U3M|1|2|A|266
4U3M|1|2|U|267
*
4U3M|1|2|A|288
4U3M|1|2|U|289
4U3M|1|2|G|290
4U3M|1|2|G|291
4U3M|1|2|U|292
4U3M|1|2|U|293

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A