J5_4U3U_009

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

4U3U|1|2|U|128, 4U3U|1|2|U|132, 4U3U|1|2|A|140, 4U3U|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U3U|1|2|A|124
4U3U|1|2|U|125
4U3U|1|2|A|126
4U3U|1|2|G|127
4U3U|1|2|U|128
4U3U|1|2|U|129
4U3U|1|2|C|130
4U3U|1|2|C|131
4U3U|1|2|U|132
4U3U|1|2|U|133
4U3U|1|2|U|134
4U3U|1|2|A|135
4U3U|1|2|C|136
4U3U|1|2|U|137
4U3U|1|2|A|138
4U3U|1|2|C|139
4U3U|1|2|A|140
4U3U|1|2|U|141
4U3U|1|2|G|142
4U3U|1|2|G|143
*
4U3U|1|2|C|172
4U3U|1|2|A|173
4U3U|1|2|U|174
4U3U|1|2|G|175
4U3U|1|2|C|176
4U3U|1|2|U|177
4U3U|1|2|U|178
4U3U|1|2|A|179
4U3U|1|2|A|180
4U3U|1|2|A|181
4U3U|1|2|A|182
*
4U3U|1|2|U|203
4U3U|1|2|G|204
*
4U3U|1|2|C|263
4U3U|1|2|G|264
4U3U|1|2|A|265
*
4U3U|1|2|U|289
4U3U|1|2|G|290
4U3U|1|2|G|291
4U3U|1|2|U|292
4U3U|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A