J5_4U3U_011

3D structure

PDB id

4U3U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cycloheximide bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

4U3U|1|2|U|638, 4U3U|1|2|U|639, 4U3U|1|2|U|694, 4U3U|1|2|C|696, 4U3U|1|2|C|697, 4U3U|1|2|U|813, 4U3U|1|2|G|815, 4U3U|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U3U|1|2|A|636
4U3U|1|2|C|637
4U3U|1|2|U|638
4U3U|1|2|U|639
4U3U|1|2|U|640
4U3U|1|2|G|641
*
4U3U|1|2|U|693
4U3U|1|2|U|694
4U3U|1|2|U|695
4U3U|1|2|C|696
4U3U|1|2|C|697
4U3U|1|2|U|698
*
4U3U|1|2|A|740
4U3U|1|2|C|741
4U3U|1|2|U|742
4U3U|1|2|U|743
4U3U|1|2|U|744
*
4U3U|1|2|A|807
4U3U|1|2|U|808
4U3U|1|2|A|809
4U3U|1|2|G|810
4U3U|1|2|A|811
4U3U|1|2|A|812
4U3U|1|2|U|813
4U3U|1|2|A|814
4U3U|1|2|G|815
4U3U|1|2|G|816
4U3U|1|2|A|817
*
4U3U|1|2|U|854
4U3U|1|2|A|855
4U3U|1|2|A|856
4U3U|1|2|U|857
4U3U|1|2|G|858
4U3U|1|2|A|859
4U3U|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain C3

40S ribosomal protein S13

Chain D2

40S ribosomal protein S22-A

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A