J5_4U4O_008

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAAU*AUG*CGA*UGGUU

Length

43 nucleotides

Bulged bases

4U4O|1|2|U|128, 4U4O|1|2|U|132, 4U4O|1|2|U|133, 4U4O|1|2|C|136, 4U4O|1|2|U|137, 4U4O|1|2|A|140, 4U4O|1|2|U|141, 4U4O|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|2|A|124
4U4O|1|2|U|125
4U4O|1|2|A|126
4U4O|1|2|G|127
4U4O|1|2|U|128
4U4O|1|2|U|129
4U4O|1|2|C|130
4U4O|1|2|C|131
4U4O|1|2|U|132
4U4O|1|2|U|133
4U4O|1|2|U|134
4U4O|1|2|A|135
4U4O|1|2|C|136
4U4O|1|2|U|137
4U4O|1|2|A|138
4U4O|1|2|C|139
4U4O|1|2|A|140
4U4O|1|2|U|141
4U4O|1|2|G|142
4U4O|1|2|G|143
*
4U4O|1|2|C|172
4U4O|1|2|A|173
4U4O|1|2|U|174
4U4O|1|2|G|175
4U4O|1|2|C|176
4U4O|1|2|U|177
4U4O|1|2|U|178
4U4O|1|2|A|179
4U4O|1|2|A|180
4U4O|1|2|A|181
4U4O|1|2|A|182
4U4O|1|2|U|183
*
4U4O|1|2|A|202
4U4O|1|2|U|203
4U4O|1|2|G|204
*
4U4O|1|2|C|263
4U4O|1|2|G|264
4U4O|1|2|A|265
*
4U4O|1|2|U|289
4U4O|1|2|G|290
4U4O|1|2|G|291
4U4O|1|2|U|292
4U4O|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A