J5_4U4O_010

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

ACUUUGGGC*GCCUUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

41 nucleotides

Bulged bases

4U4O|1|2|U|639, 4U4O|1|2|U|694, 4U4O|1|2|C|696, 4U4O|1|2|C|697, 4U4O|1|2|U|813, 4U4O|1|2|G|815, 4U4O|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|2|A|636
4U4O|1|2|C|637
4U4O|1|2|U|638
4U4O|1|2|U|639
4U4O|1|2|U|640
4U4O|1|2|G|641
4U4O|1|2|G|642
4U4O|1|2|G|643
4U4O|1|2|C|644
*
4U4O|1|2|G|690
4U4O|1|2|C|691
4U4O|1|2|C|692
4U4O|1|2|U|693
4U4O|1|2|U|694
4U4O|1|2|U|695
4U4O|1|2|C|696
4U4O|1|2|C|697
4U4O|1|2|U|698
*
4U4O|1|2|A|740
4U4O|1|2|C|741
4U4O|1|2|U|742
4U4O|1|2|U|743
4U4O|1|2|U|744
*
4U4O|1|2|A|807
4U4O|1|2|U|808
4U4O|1|2|A|809
4U4O|1|2|G|810
4U4O|1|2|A|811
4U4O|1|2|A|812
4U4O|1|2|U|813
4U4O|1|2|A|814
4U4O|1|2|G|815
4U4O|1|2|G|816
4U4O|1|2|A|817
*
4U4O|1|2|U|854
4U4O|1|2|A|855
4U4O|1|2|A|856
4U4O|1|2|U|857
4U4O|1|2|G|858
4U4O|1|2|A|859
4U4O|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain C3

40S ribosomal protein S13

Chain D2

40S ribosomal protein S22-A

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A