J5_4U4O_015

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

AAGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUUU

Length

42 nucleotides

Bulged bases

4U4O|1|5|A|2401, 4U4O|1|5|A|2817, 4U4O|1|5|U|2818, 4U4O|1|5|U|2978, 4U4O|1|5|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|5|A|2398
4U4O|1|5|A|2399
4U4O|1|5|G|2400
4U4O|1|5|A|2401
4U4O|1|5|A|2402
4U4O|1|5|G|2403
4U4O|1|5|A|2404
4U4O|1|5|C|2405
4U4O|1|5|C|2406
*
4U4O|1|5|G|2815
4U4O|1|5|G|2816
4U4O|1|5|A|2817
4U4O|1|5|U|2818
4U4O|1|5|A|2819
4U4O|1|5|A|2820
4U4O|1|5|C|2821
4U4O|1|5|U|2822
4U4O|1|5|G|2823
*
4U4O|1|5|C|2867
4U4O|1|5|U|2868
4U4O|1|5|U|2869
4U4O|1|5|C|2870
4U4O|1|5|G|2871
4U4O|1|5|A|2872
4U4O|1|5|U|2873
4U4O|1|5|G|2874
4U4O|1|5|U|2875
4U4O|1|5|C|2876
*
4U4O|1|5|G|2951
4U4O|1|5|G|2952
4U4O|1|5|U|2953
4U4O|1|5|U|2954
4U4O|1|5|U|2955
4U4O|1|5|A|2956
4U4O|1|5|G|2957
*
4U4O|1|5|U|2975
4U4O|1|5|A|2976
4U4O|1|5|G|2977
4U4O|1|5|U|2978
4U4O|1|5|U|2979
4U4O|1|5|U|2980
4U4O|1|5|U|2981

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain l3

60S ribosomal protein L3

Chain l4

60S ribosomal protein L4-A

Chain n9

60S ribosomal protein L29