J5_4U4O_022

3D structure

PDB id

4U4O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Geneticin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAGUA*UAACGAGGAACAAU*AUAG

Length

40 nucleotides

Bulged bases

4U4O|1|2|A|541, 4U4O|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4O|1|2|C|31
4U4O|1|2|U|32
4U4O|1|2|U|33
4U4O|1|2|G|34
4U4O|1|2|U|35
*
4U4O|1|2|A|473
4U4O|1|2|A|474
4U4O|1|2|A|475
4U4O|1|2|U|476
4U4O|1|2|A|477
4U4O|1|2|A|478
4U4O|1|2|C|479
*
4U4O|1|2|G|509
4U4O|1|2|G|510
4U4O|1|2|A|511
4U4O|1|2|A|512
4U4O|1|2|U|513
4U4O|1|2|G|514
4U4O|1|2|A|515
4U4O|1|2|G|516
4U4O|1|2|U|517
4U4O|1|2|A|518
*
4U4O|1|2|U|533
4U4O|1|2|A|534
4U4O|1|2|A|535
4U4O|1|2|C|536
4U4O|1|2|G|537
4U4O|1|2|A|538
4U4O|1|2|G|539
4U4O|1|2|G|540
4U4O|1|2|A|541
4U4O|1|2|A|542
4U4O|1|2|C|543
4U4O|1|2|A|544
4U4O|1|2|A|545
4U4O|1|2|U|546
*
4U4O|1|2|A|592
4U4O|1|2|U|593
4U4O|1|2|A|594
4U4O|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain D4

40S ribosomal protein S24-A

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A