3D structure

PDB id
4U4Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Homoharringtonine bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GCAAAAUAG*UG*UG*CGGACAAGG*CAC
Length
25 nucleotides
Bulged bases
4U4Q|1|5|G|2116, 4U4Q|1|5|G|2121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4U4Q_015 not in the Motif Atlas
Homologous match to J5_8P9A_013
Geometric discrepancy: 0.0402
The information below is about J5_8P9A_013
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

4U4Q|1|5|G|1906
4U4Q|1|5|C|1907
4U4Q|1|5|A|1908
4U4Q|1|5|A|1909
4U4Q|1|5|A|1910
4U4Q|1|5|A|1911
4U4Q|1|5|U|1912
4U4Q|1|5|A|1913
4U4Q|1|5|G|1914
*
4U4Q|1|5|U|1938
4U4Q|1|5|G|1939
*
4U4Q|1|5|U|2109
4U4Q|1|5|G|2110
*
4U4Q|1|5|C|2114
4U4Q|1|5|G|2115
4U4Q|1|5|G|2116
4U4Q|1|5|A|2117
4U4Q|1|5|C|2118
4U4Q|1|5|A|2119
4U4Q|1|5|A|2120
4U4Q|1|5|G|2121
4U4Q|1|5|G|2122
*
4U4Q|1|5|C|2331
4U4Q|1|5|A|2332
4U4Q|1|5|C|2333

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain 6
Small subunit ribosomal RNA; SSU rRNA
Chain l3
60S ribosomal protein L3
Chain m9
60S ribosomal protein L19-A
Chain n3
60S ribosomal protein L23-A
Chain n4
60S ribosomal protein L24-A

Coloring options:


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