J5_4U4R_007

3D structure

PDB id

4U4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

4U4R|1|2|A|538, 4U4R|1|2|A|541, 4U4R|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4R|1|2|C|31
4U4R|1|2|U|32
4U4R|1|2|U|33
4U4R|1|2|G|34
4U4R|1|2|U|35
*
4U4R|1|2|A|473
4U4R|1|2|A|474
4U4R|1|2|A|475
4U4R|1|2|U|476
4U4R|1|2|A|477
4U4R|1|2|A|478
4U4R|1|2|C|479
*
4U4R|1|2|G|509
4U4R|1|2|G|510
4U4R|1|2|A|511
4U4R|1|2|A|512
4U4R|1|2|U|513
4U4R|1|2|G|514
4U4R|1|2|A|515
4U4R|1|2|G|516
*
4U4R|1|2|C|536
4U4R|1|2|G|537
4U4R|1|2|A|538
4U4R|1|2|G|539
4U4R|1|2|G|540
4U4R|1|2|A|541
4U4R|1|2|A|542
4U4R|1|2|C|543
4U4R|1|2|A|544
4U4R|1|2|A|545
4U4R|1|2|U|546
*
4U4R|1|2|A|592
4U4R|1|2|U|593
4U4R|1|2|A|594
4U4R|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A