J5_4U4R_009

3D structure

PDB id

4U4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

4U4R|1|2|U|128, 4U4R|1|2|U|132, 4U4R|1|2|U|133, 4U4R|1|2|A|138, 4U4R|1|2|A|140, 4U4R|1|2|U|141, 4U4R|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4R|1|2|A|124
4U4R|1|2|U|125
4U4R|1|2|A|126
4U4R|1|2|G|127
4U4R|1|2|U|128
4U4R|1|2|U|129
4U4R|1|2|C|130
4U4R|1|2|C|131
4U4R|1|2|U|132
4U4R|1|2|U|133
4U4R|1|2|U|134
4U4R|1|2|A|135
4U4R|1|2|C|136
4U4R|1|2|U|137
4U4R|1|2|A|138
4U4R|1|2|C|139
4U4R|1|2|A|140
4U4R|1|2|U|141
4U4R|1|2|G|142
4U4R|1|2|G|143
*
4U4R|1|2|C|172
4U4R|1|2|A|173
4U4R|1|2|U|174
4U4R|1|2|G|175
4U4R|1|2|C|176
4U4R|1|2|U|177
4U4R|1|2|U|178
4U4R|1|2|A|179
4U4R|1|2|A|180
4U4R|1|2|A|181
4U4R|1|2|A|182
*
4U4R|1|2|U|203
4U4R|1|2|G|204
*
4U4R|1|2|C|263
4U4R|1|2|G|264
4U4R|1|2|A|265
*
4U4R|1|2|U|289
4U4R|1|2|G|290
4U4R|1|2|G|291
4U4R|1|2|U|292
4U4R|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A