J5_4U4R_011

3D structure

PDB id

4U4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lactimidomycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

4U4R|1|2|U|639, 4U4R|1|2|U|694, 4U4R|1|2|C|696, 4U4R|1|2|C|697, 4U4R|1|2|U|813, 4U4R|1|2|G|815, 4U4R|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4R|1|2|A|636
4U4R|1|2|C|637
4U4R|1|2|U|638
4U4R|1|2|U|639
4U4R|1|2|U|640
4U4R|1|2|G|641
*
4U4R|1|2|U|693
4U4R|1|2|U|694
4U4R|1|2|U|695
4U4R|1|2|C|696
4U4R|1|2|C|697
4U4R|1|2|U|698
*
4U4R|1|2|A|740
4U4R|1|2|C|741
4U4R|1|2|U|742
4U4R|1|2|U|743
4U4R|1|2|U|744
*
4U4R|1|2|A|807
4U4R|1|2|U|808
4U4R|1|2|A|809
4U4R|1|2|G|810
4U4R|1|2|A|811
4U4R|1|2|A|812
4U4R|1|2|U|813
4U4R|1|2|A|814
4U4R|1|2|G|815
4U4R|1|2|G|816
4U4R|1|2|A|817
*
4U4R|1|2|U|854
4U4R|1|2|A|855
4U4R|1|2|A|856
4U4R|1|2|U|857
4U4R|1|2|G|858
4U4R|1|2|A|859
4U4R|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain C3

40S ribosomal protein S13

Chain D2

40S ribosomal protein S22-A

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A