J5_4U4U_009

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

4U4U|1|2|U|128, 4U4U|1|2|U|132, 4U4U|1|2|A|140, 4U4U|1|2|U|141, 4U4U|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4U|1|2|A|124
4U4U|1|2|U|125
4U4U|1|2|A|126
4U4U|1|2|G|127
4U4U|1|2|U|128
4U4U|1|2|U|129
4U4U|1|2|C|130
4U4U|1|2|C|131
4U4U|1|2|U|132
4U4U|1|2|U|133
4U4U|1|2|U|134
4U4U|1|2|A|135
4U4U|1|2|C|136
4U4U|1|2|U|137
4U4U|1|2|A|138
4U4U|1|2|C|139
4U4U|1|2|A|140
4U4U|1|2|U|141
4U4U|1|2|G|142
4U4U|1|2|G|143
*
4U4U|1|2|C|172
4U4U|1|2|A|173
4U4U|1|2|U|174
4U4U|1|2|G|175
4U4U|1|2|C|176
4U4U|1|2|U|177
4U4U|1|2|U|178
4U4U|1|2|A|179
4U4U|1|2|A|180
4U4U|1|2|A|181
4U4U|1|2|A|182
*
4U4U|1|2|U|203
4U4U|1|2|G|204
*
4U4U|1|2|C|263
4U4U|1|2|G|264
4U4U|1|2|A|265
*
4U4U|1|2|U|289
4U4U|1|2|G|290
4U4U|1|2|G|291
4U4U|1|2|U|292
4U4U|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A