J5_4U4U_018

3D structure

PDB id

4U4U (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Lycorine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

4U4U|1|6|A|541, 4U4U|1|6|C|543, 4U4U|1|6|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4U|1|6|C|31
4U4U|1|6|U|32
4U4U|1|6|U|33
4U4U|1|6|G|34
4U4U|1|6|U|35
*
4U4U|1|6|A|473
4U4U|1|6|A|474
4U4U|1|6|A|475
4U4U|1|6|U|476
4U4U|1|6|A|477
4U4U|1|6|A|478
4U4U|1|6|C|479
*
4U4U|1|6|G|509
4U4U|1|6|G|510
4U4U|1|6|A|511
4U4U|1|6|A|512
4U4U|1|6|U|513
4U4U|1|6|G|514
4U4U|1|6|A|515
4U4U|1|6|G|516
*
4U4U|1|6|C|536
4U4U|1|6|G|537
4U4U|1|6|A|538
4U4U|1|6|G|539
4U4U|1|6|G|540
4U4U|1|6|A|541
4U4U|1|6|A|542
4U4U|1|6|C|543
4U4U|1|6|A|544
4U4U|1|6|A|545
4U4U|1|6|U|546
*
4U4U|1|6|A|592
4U4U|1|6|U|593
4U4U|1|6|A|594
4U4U|1|6|G|595

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain d3

40S ribosomal protein S23-A

Chain e0

40S ribosomal protein S30-A

Chain s9

40S ribosomal protein S9-A