J5_4U4U_020
3D structure
- PDB id
- 4U4U (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Lycorine bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU
- Length
- 35 nucleotides
- Bulged bases
- 4U4U|1|6|U|639, 4U4U|1|6|U|694, 4U4U|1|6|C|696, 4U4U|1|6|U|742, 4U4U|1|6|U|813, 4U4U|1|6|G|815, 4U4U|1|6|A|856
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U4U|1|6|A|636
4U4U|1|6|C|637
4U4U|1|6|U|638
4U4U|1|6|U|639
4U4U|1|6|U|640
4U4U|1|6|G|641
*
4U4U|1|6|U|693
4U4U|1|6|U|694
4U4U|1|6|U|695
4U4U|1|6|C|696
4U4U|1|6|C|697
4U4U|1|6|U|698
*
4U4U|1|6|A|740
4U4U|1|6|C|741
4U4U|1|6|U|742
4U4U|1|6|U|743
4U4U|1|6|U|744
*
4U4U|1|6|A|807
4U4U|1|6|U|808
4U4U|1|6|A|809
4U4U|1|6|G|810
4U4U|1|6|A|811
4U4U|1|6|A|812
4U4U|1|6|U|813
4U4U|1|6|A|814
4U4U|1|6|G|815
4U4U|1|6|G|816
4U4U|1|6|A|817
*
4U4U|1|6|U|854
4U4U|1|6|A|855
4U4U|1|6|A|856
4U4U|1|6|U|857
4U4U|1|6|G|858
4U4U|1|6|A|859
4U4U|1|6|U|860
Current chains
- Chain 6
- 18S ribosomal RNA
Nearby chains
- Chain c1
- 40S ribosomal protein S11-A
- Chain c3
- 40S ribosomal protein S13
- Chain d2
- 40S ribosomal protein S22-A
- Chain m9
- 60S ribosomal protein L19-A
- Chain s4
- 40S ribosomal protein S4-A
- Chain s7
- 40S ribosomal protein S7-A
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