J5_4U4Y_007

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

4U4Y|1|2|A|538, 4U4Y|1|2|A|541, 4U4Y|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Y|1|2|C|31
4U4Y|1|2|U|32
4U4Y|1|2|U|33
4U4Y|1|2|G|34
4U4Y|1|2|U|35
*
4U4Y|1|2|A|473
4U4Y|1|2|A|474
4U4Y|1|2|A|475
4U4Y|1|2|U|476
4U4Y|1|2|A|477
4U4Y|1|2|A|478
4U4Y|1|2|C|479
*
4U4Y|1|2|G|509
4U4Y|1|2|G|510
4U4Y|1|2|A|511
4U4Y|1|2|A|512
4U4Y|1|2|U|513
4U4Y|1|2|G|514
4U4Y|1|2|A|515
4U4Y|1|2|G|516
*
4U4Y|1|2|C|536
4U4Y|1|2|G|537
4U4Y|1|2|A|538
4U4Y|1|2|G|539
4U4Y|1|2|G|540
4U4Y|1|2|A|541
4U4Y|1|2|A|542
4U4Y|1|2|C|543
4U4Y|1|2|A|544
4U4Y|1|2|A|545
4U4Y|1|2|U|546
*
4U4Y|1|2|A|592
4U4Y|1|2|U|593
4U4Y|1|2|A|594
4U4Y|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A