J5_4U4Y_009

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

4U4Y|1|2|U|128, 4U4Y|1|2|U|132, 4U4Y|1|2|U|133, 4U4Y|1|2|C|136, 4U4Y|1|2|U|137, 4U4Y|1|2|A|140, 4U4Y|1|2|U|141, 4U4Y|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Y|1|2|A|124
4U4Y|1|2|U|125
4U4Y|1|2|A|126
4U4Y|1|2|G|127
4U4Y|1|2|U|128
4U4Y|1|2|U|129
4U4Y|1|2|C|130
4U4Y|1|2|C|131
4U4Y|1|2|U|132
4U4Y|1|2|U|133
4U4Y|1|2|U|134
4U4Y|1|2|A|135
4U4Y|1|2|C|136
4U4Y|1|2|U|137
4U4Y|1|2|A|138
4U4Y|1|2|C|139
4U4Y|1|2|A|140
4U4Y|1|2|U|141
4U4Y|1|2|G|142
4U4Y|1|2|G|143
*
4U4Y|1|2|C|172
4U4Y|1|2|A|173
4U4Y|1|2|U|174
4U4Y|1|2|G|175
4U4Y|1|2|C|176
4U4Y|1|2|U|177
4U4Y|1|2|U|178
4U4Y|1|2|A|179
4U4Y|1|2|A|180
4U4Y|1|2|A|181
4U4Y|1|2|A|182
*
4U4Y|1|2|U|203
4U4Y|1|2|G|204
*
4U4Y|1|2|C|263
4U4Y|1|2|G|264
4U4Y|1|2|A|265
*
4U4Y|1|2|U|289
4U4Y|1|2|G|290
4U4Y|1|2|G|291
4U4Y|1|2|U|292
4U4Y|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A