J5_4U4Y_011

3D structure

PDB id

4U4Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Pactamycin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGACGUUUGG*CCAUCGUAAUGAU

Length

48 nucleotides

Bulged bases

4U4Y|1|2|U|638, 4U4Y|1|2|U|639, 4U4Y|1|2|U|694, 4U4Y|1|2|C|696, 4U4Y|1|2|C|697, 4U4Y|1|2|U|813, 4U4Y|1|2|G|815, 4U4Y|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Y|1|2|A|636
4U4Y|1|2|C|637
4U4Y|1|2|U|638
4U4Y|1|2|U|639
4U4Y|1|2|U|640
4U4Y|1|2|G|641
*
4U4Y|1|2|U|693
4U4Y|1|2|U|694
4U4Y|1|2|U|695
4U4Y|1|2|C|696
4U4Y|1|2|C|697
4U4Y|1|2|U|698
*
4U4Y|1|2|A|740
4U4Y|1|2|C|741
4U4Y|1|2|U|742
4U4Y|1|2|U|743
4U4Y|1|2|U|744
*
4U4Y|1|2|A|807
4U4Y|1|2|U|808
4U4Y|1|2|A|809
4U4Y|1|2|G|810
4U4Y|1|2|A|811
4U4Y|1|2|A|812
4U4Y|1|2|U|813
4U4Y|1|2|A|814
4U4Y|1|2|G|815
4U4Y|1|2|G|816
4U4Y|1|2|A|817
4U4Y|1|2|C|818
4U4Y|1|2|G|819
4U4Y|1|2|U|820
4U4Y|1|2|U|821
4U4Y|1|2|U|822
4U4Y|1|2|G|823
4U4Y|1|2|G|824
*
4U4Y|1|2|C|848
4U4Y|1|2|C|849
4U4Y|1|2|A|850
4U4Y|1|2|U|851
4U4Y|1|2|C|852
4U4Y|1|2|G|853
4U4Y|1|2|U|854
4U4Y|1|2|A|855
4U4Y|1|2|A|856
4U4Y|1|2|U|857
4U4Y|1|2|G|858
4U4Y|1|2|A|859
4U4Y|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain C3

40S ribosomal protein S13

Chain D2

40S ribosomal protein S22-A

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A