J5_4U4Z_011

3D structure

PDB id

4U4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Phyllanthoside bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGA*UAAUGAU

Length

35 nucleotides

Bulged bases

4U4Z|1|2|U|638, 4U4Z|1|2|U|639, 4U4Z|1|2|C|696, 4U4Z|1|2|C|697, 4U4Z|1|2|U|813, 4U4Z|1|2|G|815, 4U4Z|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U4Z|1|2|A|636
4U4Z|1|2|C|637
4U4Z|1|2|U|638
4U4Z|1|2|U|639
4U4Z|1|2|U|640
4U4Z|1|2|G|641
*
4U4Z|1|2|U|693
4U4Z|1|2|U|694
4U4Z|1|2|U|695
4U4Z|1|2|C|696
4U4Z|1|2|C|697
4U4Z|1|2|U|698
*
4U4Z|1|2|A|740
4U4Z|1|2|C|741
4U4Z|1|2|U|742
4U4Z|1|2|U|743
4U4Z|1|2|U|744
*
4U4Z|1|2|A|807
4U4Z|1|2|U|808
4U4Z|1|2|A|809
4U4Z|1|2|G|810
4U4Z|1|2|A|811
4U4Z|1|2|A|812
4U4Z|1|2|U|813
4U4Z|1|2|A|814
4U4Z|1|2|G|815
4U4Z|1|2|G|816
4U4Z|1|2|A|817
*
4U4Z|1|2|U|854
4U4Z|1|2|A|855
4U4Z|1|2|A|856
4U4Z|1|2|U|857
4U4Z|1|2|G|858
4U4Z|1|2|A|859
4U4Z|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain C3

40S ribosomal protein S13

Chain D2

40S ribosomal protein S22-A

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A