J5_4U50_010

3D structure

PDB id

4U50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Verrucarin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

4U50|1|2|U|128, 4U50|1|2|U|132, 4U50|1|2|C|136, 4U50|1|2|U|137, 4U50|1|2|A|140, 4U50|1|2|U|141, 4U50|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U50|1|2|A|124
4U50|1|2|U|125
4U50|1|2|A|126
4U50|1|2|G|127
4U50|1|2|U|128
4U50|1|2|U|129
4U50|1|2|C|130
4U50|1|2|C|131
4U50|1|2|U|132
4U50|1|2|U|133
4U50|1|2|U|134
4U50|1|2|A|135
4U50|1|2|C|136
4U50|1|2|U|137
4U50|1|2|A|138
4U50|1|2|C|139
4U50|1|2|A|140
4U50|1|2|U|141
4U50|1|2|G|142
4U50|1|2|G|143
*
4U50|1|2|C|172
4U50|1|2|A|173
4U50|1|2|U|174
4U50|1|2|G|175
4U50|1|2|C|176
4U50|1|2|U|177
4U50|1|2|U|178
4U50|1|2|A|179
4U50|1|2|A|180
4U50|1|2|A|181
4U50|1|2|A|182
*
4U50|1|2|U|203
4U50|1|2|G|204
*
4U50|1|2|C|263
4U50|1|2|G|264
4U50|1|2|A|265
4U50|1|2|A|266
4U50|1|2|U|267
*
4U50|1|2|A|288
4U50|1|2|U|289
4U50|1|2|G|290
4U50|1|2|G|291
4U50|1|2|U|292
4U50|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A