3D structure

PDB id
4U50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Verrucarin bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.2 Å

Loop

Sequence
UUGA*UUUG*CA*UG*CAGAAAA
Length
19 nucleotides
Bulged bases
4U50|1|5|G|2418, 4U50|1|5|A|2799, 4U50|1|5|G|2800, 4U50|1|5|A|2801, 4U50|1|5|A|2802
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_4U50_017 not in the Motif Atlas
Homologous match to J5_8P9A_015
Geometric discrepancy: 0.0421
The information below is about J5_8P9A_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_08912.1
Basepair signature
cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

4U50|1|5|U|2416
4U50|1|5|U|2417
4U50|1|5|G|2418
4U50|1|5|A|2419
*
4U50|1|5|U|2611
4U50|1|5|U|2612
4U50|1|5|U|2613
4U50|1|5|G|2614
*
4U50|1|5|C|2627
4U50|1|5|A|2628
*
4U50|1|5|U|2650
4U50|1|5|G|2651
*
4U50|1|5|C|2798
4U50|1|5|A|2799
4U50|1|5|G|2800
4U50|1|5|A|2801
4U50|1|5|A|2802
4U50|1|5|A|2803
4U50|1|5|A|2804

Current chains

Chain 5
25S ribosomal RNA

Nearby chains

Chain l2
60S ribosomal protein L2-A
Chain m5
60S ribosomal protein L15-A
Chain m8
60S ribosomal protein L18-A
Chain n1
60S ribosomal protein L21-A
Chain n8
60S ribosomal protein L28
Chain n9
60S ribosomal protein L29
Chain q2
60S ribosomal protein L42-A

Coloring options:


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