J5_4U51_010

3D structure

PDB id

4U51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Narciclasine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

4U51|1|2|U|128, 4U51|1|2|U|132, 4U51|1|2|C|136, 4U51|1|2|U|137, 4U51|1|2|A|140, 4U51|1|2|U|141, 4U51|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U51|1|2|A|124
4U51|1|2|U|125
4U51|1|2|A|126
4U51|1|2|G|127
4U51|1|2|U|128
4U51|1|2|U|129
4U51|1|2|C|130
4U51|1|2|C|131
4U51|1|2|U|132
4U51|1|2|U|133
4U51|1|2|U|134
4U51|1|2|A|135
4U51|1|2|C|136
4U51|1|2|U|137
4U51|1|2|A|138
4U51|1|2|C|139
4U51|1|2|A|140
4U51|1|2|U|141
4U51|1|2|G|142
4U51|1|2|G|143
*
4U51|1|2|C|172
4U51|1|2|A|173
4U51|1|2|U|174
4U51|1|2|G|175
4U51|1|2|C|176
4U51|1|2|U|177
4U51|1|2|U|178
4U51|1|2|A|179
4U51|1|2|A|180
4U51|1|2|A|181
4U51|1|2|A|182
*
4U51|1|2|U|203
4U51|1|2|G|204
*
4U51|1|2|C|263
4U51|1|2|G|264
4U51|1|2|A|265
4U51|1|2|A|266
4U51|1|2|U|267
*
4U51|1|2|A|288
4U51|1|2|U|289
4U51|1|2|G|290
4U51|1|2|G|291
4U51|1|2|U|292
4U51|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A