J5_4U52_004
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 4U52|1|1|G|2116, 4U52|1|1|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4U52_004 not in the Motif Atlas
- Homologous match to J5_8P9A_013
- Geometric discrepancy: 0.058
- The information below is about J5_8P9A_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
4U52|1|1|G|1906
4U52|1|1|C|1907
4U52|1|1|A|1908
4U52|1|1|A|1909
4U52|1|1|A|1910
4U52|1|1|A|1911
4U52|1|1|U|1912
4U52|1|1|A|1913
4U52|1|1|G|1914
*
4U52|1|1|U|1938
4U52|1|1|G|1939
*
4U52|1|1|U|2109
4U52|1|1|G|2110
*
4U52|1|1|C|2114
4U52|1|1|G|2115
4U52|1|1|G|2116
4U52|1|1|A|2117
4U52|1|1|C|2118
4U52|1|1|A|2119
4U52|1|1|A|2120
4U52|1|1|G|2121
4U52|1|1|G|2122
*
4U52|1|1|C|2331
4U52|1|1|A|2332
4U52|1|1|C|2333
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain L3
- 60S ribosomal protein L3
- Chain M9
- 60S ribosomal protein L19-A
- Chain N3
- 60S ribosomal protein L23-A
- Chain N4
- 60S ribosomal protein L24-A
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