J5_4U52_007

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

4U52|1|2|A|541, 4U52|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U52|1|2|C|31
4U52|1|2|U|32
4U52|1|2|U|33
4U52|1|2|G|34
4U52|1|2|U|35
*
4U52|1|2|A|473
4U52|1|2|A|474
4U52|1|2|A|475
4U52|1|2|U|476
4U52|1|2|A|477
4U52|1|2|A|478
4U52|1|2|C|479
*
4U52|1|2|G|509
4U52|1|2|G|510
4U52|1|2|A|511
4U52|1|2|A|512
4U52|1|2|U|513
4U52|1|2|G|514
4U52|1|2|A|515
4U52|1|2|G|516
*
4U52|1|2|C|536
4U52|1|2|G|537
4U52|1|2|A|538
4U52|1|2|G|539
4U52|1|2|G|540
4U52|1|2|A|541
4U52|1|2|A|542
4U52|1|2|C|543
4U52|1|2|A|544
4U52|1|2|A|545
4U52|1|2|U|546
*
4U52|1|2|A|592
4U52|1|2|U|593
4U52|1|2|A|594
4U52|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A