J5_4U52_009

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

4U52|1|2|U|128, 4U52|1|2|U|132, 4U52|1|2|C|136, 4U52|1|2|U|137, 4U52|1|2|A|140, 4U52|1|2|U|141, 4U52|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U52|1|2|A|124
4U52|1|2|U|125
4U52|1|2|A|126
4U52|1|2|G|127
4U52|1|2|U|128
4U52|1|2|U|129
4U52|1|2|C|130
4U52|1|2|C|131
4U52|1|2|U|132
4U52|1|2|U|133
4U52|1|2|U|134
4U52|1|2|A|135
4U52|1|2|C|136
4U52|1|2|U|137
4U52|1|2|A|138
4U52|1|2|C|139
4U52|1|2|A|140
4U52|1|2|U|141
4U52|1|2|G|142
4U52|1|2|G|143
*
4U52|1|2|C|172
4U52|1|2|A|173
4U52|1|2|U|174
4U52|1|2|G|175
4U52|1|2|C|176
4U52|1|2|U|177
4U52|1|2|U|178
4U52|1|2|A|179
4U52|1|2|A|180
4U52|1|2|A|181
4U52|1|2|A|182
*
4U52|1|2|U|203
4U52|1|2|G|204
*
4U52|1|2|C|263
4U52|1|2|G|264
4U52|1|2|A|265
*
4U52|1|2|U|289
4U52|1|2|G|290
4U52|1|2|G|291
4U52|1|2|U|292
4U52|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A