J5_4U52_011

3D structure

PDB id

4U52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nagilactone C bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

ACUUUG*UUUCCUU*GACUUU*AUAGAAUAGGACGUUUGG*CCAUCGUAAUGAU

Length

50 nucleotides

Bulged bases

4U52|1|2|U|638, 4U52|1|2|U|639, 4U52|1|2|U|694, 4U52|1|2|C|696, 4U52|1|2|C|697, 4U52|1|2|U|813, 4U52|1|2|G|815, 4U52|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U52|1|2|A|636
4U52|1|2|C|637
4U52|1|2|U|638
4U52|1|2|U|639
4U52|1|2|U|640
4U52|1|2|G|641
*
4U52|1|2|U|693
4U52|1|2|U|694
4U52|1|2|U|695
4U52|1|2|C|696
4U52|1|2|C|697
4U52|1|2|U|698
4U52|1|2|U|699
*
4U52|1|2|G|739
4U52|1|2|A|740
4U52|1|2|C|741
4U52|1|2|U|742
4U52|1|2|U|743
4U52|1|2|U|744
*
4U52|1|2|A|807
4U52|1|2|U|808
4U52|1|2|A|809
4U52|1|2|G|810
4U52|1|2|A|811
4U52|1|2|A|812
4U52|1|2|U|813
4U52|1|2|A|814
4U52|1|2|G|815
4U52|1|2|G|816
4U52|1|2|A|817
4U52|1|2|C|818
4U52|1|2|G|819
4U52|1|2|U|820
4U52|1|2|U|821
4U52|1|2|U|822
4U52|1|2|G|823
4U52|1|2|G|824
*
4U52|1|2|C|848
4U52|1|2|C|849
4U52|1|2|A|850
4U52|1|2|U|851
4U52|1|2|C|852
4U52|1|2|G|853
4U52|1|2|U|854
4U52|1|2|A|855
4U52|1|2|A|856
4U52|1|2|U|857
4U52|1|2|G|858
4U52|1|2|A|859
4U52|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain C3

40S ribosomal protein S13

Chain D2

40S ribosomal protein S22-A

Chain M9

60S ribosomal protein L19-A

Chain S4

40S ribosomal protein S4-A

Chain S7

40S ribosomal protein S7-A