J5_4U52_016
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 4U52|1|5|A|2404, 4U52|1|5|A|2817, 4U52|1|5|G|2874, 4U52|1|5|U|2875, 4U52|1|5|U|2978, 4U52|1|5|U|2979
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4U52|1|5|A|2399
4U52|1|5|G|2400
4U52|1|5|A|2401
4U52|1|5|A|2402
4U52|1|5|G|2403
4U52|1|5|A|2404
4U52|1|5|C|2405
4U52|1|5|C|2406
*
4U52|1|5|G|2815
4U52|1|5|G|2816
4U52|1|5|A|2817
4U52|1|5|U|2818
4U52|1|5|A|2819
4U52|1|5|A|2820
4U52|1|5|C|2821
4U52|1|5|U|2822
4U52|1|5|G|2823
*
4U52|1|5|C|2867
4U52|1|5|U|2868
4U52|1|5|U|2869
4U52|1|5|C|2870
4U52|1|5|G|2871
4U52|1|5|A|2872
4U52|1|5|U|2873
4U52|1|5|G|2874
4U52|1|5|U|2875
4U52|1|5|C|2876
*
4U52|1|5|G|2951
4U52|1|5|G|2952
4U52|1|5|U|2953
4U52|1|5|U|2954
4U52|1|5|U|2955
4U52|1|5|A|2956
4U52|1|5|G|2957
*
4U52|1|5|U|2975
4U52|1|5|A|2976
4U52|1|5|G|2977
4U52|1|5|U|2978
4U52|1|5|U|2979
4U52|1|5|U|2980
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain l3
- 60S ribosomal protein L3
- Chain l4
- 60S ribosomal protein L4-A
- Chain n9
- 60S ribosomal protein L29
Coloring options: