J5_4U52_017
3D structure
- PDB id
- 4U52 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of Nagilactone C bound to the yeast 80S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 4U52|1|5|G|2418, 4U52|1|5|A|2799, 4U52|1|5|G|2800, 4U52|1|5|A|2801, 4U52|1|5|A|2802
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4U52_017 not in the Motif Atlas
- Homologous match to J5_8P9A_015
- Geometric discrepancy: 0.054
- The information below is about J5_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_96125.1
- Basepair signature
- cWW-cWH-cWH-tSS-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
4U52|1|5|U|2416
4U52|1|5|U|2417
4U52|1|5|G|2418
4U52|1|5|A|2419
*
4U52|1|5|U|2611
4U52|1|5|U|2612
4U52|1|5|U|2613
4U52|1|5|G|2614
*
4U52|1|5|C|2627
4U52|1|5|A|2628
*
4U52|1|5|U|2650
4U52|1|5|G|2651
*
4U52|1|5|C|2798
4U52|1|5|A|2799
4U52|1|5|G|2800
4U52|1|5|A|2801
4U52|1|5|A|2802
4U52|1|5|A|2803
4U52|1|5|A|2804
Current chains
- Chain 5
- 25S ribosomal RNA
Nearby chains
- Chain l2
- 60S ribosomal protein L2-A
- Chain m5
- 60S ribosomal protein L15-A
- Chain m8
- 60S ribosomal protein L18-A
- Chain n1
- 60S ribosomal protein L21-A
- Chain n8
- 60S ribosomal protein L28
- Chain n9
- 60S ribosomal protein L29
- Chain q2
- 60S ribosomal protein L42-A
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