J5_4U53_002

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAGUC*GGAC*GUUC*GC*GCAGAUC

Length

23 nucleotides

Bulged bases

4U53|1|1|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_4U53_002 not in the Motif Atlas

Homologous match to J5_8P9A_011

Geometric discrepancy: 0.0459

The information below is about J5_8P9A_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_63811.1

Basepair signature

cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

4U53|1|1|G|658
4U53|1|1|G|659
4U53|1|1|A|660
4U53|1|1|G|661
4U53|1|1|U|662
4U53|1|1|C|663
*
4U53|1|1|G|799
4U53|1|1|G|800
4U53|1|1|A|801
4U53|1|1|C|802
*
4U53|1|1|G|941
4U53|1|1|U|942
4U53|1|1|U|943
4U53|1|1|C|944
*
4U53|1|1|G|1375
4U53|1|1|C|1376
*
4U53|1|1|G|1431
4U53|1|1|C|1432
4U53|1|1|A|1433
4U53|1|1|G|1434
4U53|1|1|A|1435
4U53|1|1|U|1436
4U53|1|1|C|1437

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain L4

60S ribosomal protein L4-A

Chain M3

60S ribosomal protein L13-A

Chain M5

60S ribosomal protein L15-A

Chain N8

60S ribosomal protein L28

Chain O2

60S ribosomal protein L32