J5_4U53_022

3D structure

PDB id

4U53 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

4U53|1|2|U|128, 4U53|1|2|U|132, 4U53|1|2|C|136, 4U53|1|2|U|137, 4U53|1|2|A|140, 4U53|1|2|U|141, 4U53|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U53|1|2|A|124
4U53|1|2|U|125
4U53|1|2|A|126
4U53|1|2|G|127
4U53|1|2|U|128
4U53|1|2|U|129
4U53|1|2|C|130
4U53|1|2|C|131
4U53|1|2|U|132
4U53|1|2|U|133
4U53|1|2|U|134
4U53|1|2|A|135
4U53|1|2|C|136
4U53|1|2|U|137
4U53|1|2|A|138
4U53|1|2|C|139
4U53|1|2|A|140
4U53|1|2|U|141
4U53|1|2|G|142
4U53|1|2|G|143
*
4U53|1|2|C|172
4U53|1|2|A|173
4U53|1|2|U|174
4U53|1|2|G|175
4U53|1|2|C|176
4U53|1|2|U|177
4U53|1|2|U|178
4U53|1|2|A|179
4U53|1|2|A|180
4U53|1|2|A|181
4U53|1|2|A|182
*
4U53|1|2|U|203
4U53|1|2|G|204
*
4U53|1|2|C|263
4U53|1|2|G|264
4U53|1|2|A|265
4U53|1|2|A|266
4U53|1|2|U|267
*
4U53|1|2|A|288
4U53|1|2|U|289
4U53|1|2|G|290
4U53|1|2|G|291
4U53|1|2|U|292
4U53|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A