3D structure

PDB id
4U53 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of Deoxynivalenol bound to the yeast 80S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGACGUUUGG*CCAUCGUAAUGAU
Length
48 nucleotides
Bulged bases
4U53|1|2|U|638, 4U53|1|2|U|639, 4U53|1|2|C|696, 4U53|1|2|C|697, 4U53|1|2|U|813, 4U53|1|2|G|815, 4U53|1|2|A|856
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4U53|1|2|A|636
4U53|1|2|C|637
4U53|1|2|U|638
4U53|1|2|U|639
4U53|1|2|U|640
4U53|1|2|G|641
*
4U53|1|2|U|693
4U53|1|2|U|694
4U53|1|2|U|695
4U53|1|2|C|696
4U53|1|2|C|697
4U53|1|2|U|698
*
4U53|1|2|A|740
4U53|1|2|C|741
4U53|1|2|U|742
4U53|1|2|U|743
4U53|1|2|U|744
*
4U53|1|2|A|807
4U53|1|2|U|808
4U53|1|2|A|809
4U53|1|2|G|810
4U53|1|2|A|811
4U53|1|2|A|812
4U53|1|2|U|813
4U53|1|2|A|814
4U53|1|2|G|815
4U53|1|2|G|816
4U53|1|2|A|817
4U53|1|2|C|818
4U53|1|2|G|819
4U53|1|2|U|820
4U53|1|2|U|821
4U53|1|2|U|822
4U53|1|2|G|823
4U53|1|2|G|824
*
4U53|1|2|C|848
4U53|1|2|C|849
4U53|1|2|A|850
4U53|1|2|U|851
4U53|1|2|C|852
4U53|1|2|G|853
4U53|1|2|U|854
4U53|1|2|A|855
4U53|1|2|A|856
4U53|1|2|U|857
4U53|1|2|G|858
4U53|1|2|A|859
4U53|1|2|U|860

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain C1
40S ribosomal protein S11-A
Chain C3
40S ribosomal protein S13
Chain D2
40S ribosomal protein S22-A
Chain M9
60S ribosomal protein L19-A
Chain S7
40S ribosomal protein S7-A

Coloring options:

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