J5_4U55_010

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

4U55|1|2|U|128, 4U55|1|2|U|132, 4U55|1|2|C|136, 4U55|1|2|U|137, 4U55|1|2|A|138, 4U55|1|2|A|140, 4U55|1|2|U|141, 4U55|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U55|1|2|A|124
4U55|1|2|U|125
4U55|1|2|A|126
4U55|1|2|G|127
4U55|1|2|U|128
4U55|1|2|U|129
4U55|1|2|C|130
4U55|1|2|C|131
4U55|1|2|U|132
4U55|1|2|U|133
4U55|1|2|U|134
4U55|1|2|A|135
4U55|1|2|C|136
4U55|1|2|U|137
4U55|1|2|A|138
4U55|1|2|C|139
4U55|1|2|A|140
4U55|1|2|U|141
4U55|1|2|G|142
4U55|1|2|G|143
*
4U55|1|2|C|172
4U55|1|2|A|173
4U55|1|2|U|174
4U55|1|2|G|175
4U55|1|2|C|176
4U55|1|2|U|177
4U55|1|2|U|178
4U55|1|2|A|179
4U55|1|2|A|180
4U55|1|2|A|181
4U55|1|2|A|182
*
4U55|1|2|U|203
4U55|1|2|G|204
*
4U55|1|2|C|263
4U55|1|2|G|264
4U55|1|2|A|265
4U55|1|2|A|266
4U55|1|2|U|267
*
4U55|1|2|A|288
4U55|1|2|U|289
4U55|1|2|G|290
4U55|1|2|G|291
4U55|1|2|U|292
4U55|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A