J5_4U55_021

3D structure

PDB id

4U55 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Cryptopleurine bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGACGUUUGG*CCAUCGUAAUGAU

Length

48 nucleotides

Bulged bases

4U55|1|2|U|638, 4U55|1|2|U|639, 4U55|1|2|C|696, 4U55|1|2|C|697, 4U55|1|2|U|813, 4U55|1|2|G|815, 4U55|1|2|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U55|1|2|A|636
4U55|1|2|C|637
4U55|1|2|U|638
4U55|1|2|U|639
4U55|1|2|U|640
4U55|1|2|G|641
*
4U55|1|2|U|693
4U55|1|2|U|694
4U55|1|2|U|695
4U55|1|2|C|696
4U55|1|2|C|697
4U55|1|2|U|698
*
4U55|1|2|A|740
4U55|1|2|C|741
4U55|1|2|U|742
4U55|1|2|U|743
4U55|1|2|U|744
*
4U55|1|2|A|807
4U55|1|2|U|808
4U55|1|2|A|809
4U55|1|2|G|810
4U55|1|2|A|811
4U55|1|2|A|812
4U55|1|2|U|813
4U55|1|2|A|814
4U55|1|2|G|815
4U55|1|2|G|816
4U55|1|2|A|817
4U55|1|2|C|818
4U55|1|2|G|819
4U55|1|2|U|820
4U55|1|2|U|821
4U55|1|2|U|822
4U55|1|2|G|823
4U55|1|2|G|824
*
4U55|1|2|C|848
4U55|1|2|C|849
4U55|1|2|A|850
4U55|1|2|U|851
4U55|1|2|C|852
4U55|1|2|G|853
4U55|1|2|U|854
4U55|1|2|A|855
4U55|1|2|A|856
4U55|1|2|U|857
4U55|1|2|G|858
4U55|1|2|A|859
4U55|1|2|U|860

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain C1

40S ribosomal protein S11-A

Chain C3

40S ribosomal protein S13

Chain D2

40S ribosomal protein S22-A

Chain M9

60S ribosomal protein L19-A

Chain S7

40S ribosomal protein S7-A