J5_4U56_009

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGA*UGGUU

Length

41 nucleotides

Bulged bases

4U56|1|2|U|128, 4U56|1|2|U|132, 4U56|1|2|U|134, 4U56|1|2|A|135, 4U56|1|2|C|136, 4U56|1|2|U|137, 4U56|1|2|A|140, 4U56|1|2|U|141, 4U56|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U56|1|2|A|124
4U56|1|2|U|125
4U56|1|2|A|126
4U56|1|2|G|127
4U56|1|2|U|128
4U56|1|2|U|129
4U56|1|2|C|130
4U56|1|2|C|131
4U56|1|2|U|132
4U56|1|2|U|133
4U56|1|2|U|134
4U56|1|2|A|135
4U56|1|2|C|136
4U56|1|2|U|137
4U56|1|2|A|138
4U56|1|2|C|139
4U56|1|2|A|140
4U56|1|2|U|141
4U56|1|2|G|142
4U56|1|2|G|143
*
4U56|1|2|C|172
4U56|1|2|A|173
4U56|1|2|U|174
4U56|1|2|G|175
4U56|1|2|C|176
4U56|1|2|U|177
4U56|1|2|U|178
4U56|1|2|A|179
4U56|1|2|A|180
4U56|1|2|A|181
4U56|1|2|A|182
*
4U56|1|2|U|203
4U56|1|2|G|204
*
4U56|1|2|C|263
4U56|1|2|G|264
4U56|1|2|A|265
*
4U56|1|2|U|289
4U56|1|2|G|290
4U56|1|2|G|291
4U56|1|2|U|292
4U56|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A