J5_4U56_020

3D structure

PDB id

4U56 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Blasticidin S bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.45 Å

Loop

Sequence

ACUUUG*UUUCCU*ACUUU*AUAGAAUAGGAC*GUAAUGAU

Length

37 nucleotides

Bulged bases

4U56|1|6|U|639, 4U56|1|6|U|694, 4U56|1|6|C|696, 4U56|1|6|U|742, 4U56|1|6|U|813, 4U56|1|6|G|815, 4U56|1|6|A|856

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U56|1|6|A|636
4U56|1|6|C|637
4U56|1|6|U|638
4U56|1|6|U|639
4U56|1|6|U|640
4U56|1|6|G|641
*
4U56|1|6|U|693
4U56|1|6|U|694
4U56|1|6|U|695
4U56|1|6|C|696
4U56|1|6|C|697
4U56|1|6|U|698
*
4U56|1|6|A|740
4U56|1|6|C|741
4U56|1|6|U|742
4U56|1|6|U|743
4U56|1|6|U|744
*
4U56|1|6|A|807
4U56|1|6|U|808
4U56|1|6|A|809
4U56|1|6|G|810
4U56|1|6|A|811
4U56|1|6|A|812
4U56|1|6|U|813
4U56|1|6|A|814
4U56|1|6|G|815
4U56|1|6|G|816
4U56|1|6|A|817
4U56|1|6|C|818
*
4U56|1|6|G|853
4U56|1|6|U|854
4U56|1|6|A|855
4U56|1|6|A|856
4U56|1|6|U|857
4U56|1|6|G|858
4U56|1|6|A|859
4U56|1|6|U|860

Current chains

Chain 6

18S ribosomal RNA

Nearby chains

Chain c1

40S ribosomal protein S11-A

Chain c3

40S ribosomal protein S13

Chain d2

40S ribosomal protein S22-A

Chain m9

60S ribosomal protein L19-A

Chain s4

40S ribosomal protein S4-A

Chain s7

40S ribosomal protein S7-A