J5_4U67_003
3D structure
- PDB id
- 4U67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.65 Å
Loop
- Sequence
- CGACUU*AGAC*GUUC*GC*GCGGAUG
- Length
- 23 nucleotides
- Bulged bases
- 4U67|1|X|U|1268
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_4U67_003 not in the Motif Atlas
- Homologous match to J5_7A0S_004
- Geometric discrepancy: 0.0757
- The information below is about J5_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4U67|1|X|C|593
4U67|1|X|G|594
4U67|1|X|A|595
4U67|1|X|C|596
4U67|1|X|U|597
4U67|1|X|U|598
*
4U67|1|X|A|681
4U67|1|X|G|682
4U67|1|X|A|683
4U67|1|X|C|684
*
4U67|1|X|G|822
4U67|1|X|U|823
4U67|1|X|U|824
4U67|1|X|C|825
*
4U67|1|X|G|1209
4U67|1|X|C|1210
*
4U67|1|X|G|1263
4U67|1|X|C|1264
4U67|1|X|G|1265
4U67|1|X|G|1266
4U67|1|X|A|1267
4U67|1|X|U|1268
4U67|1|X|G|1269
Current chains
- Chain X
- 23s RNA
Nearby chains
- Chain C
- 50S ribosomal protein L4
- Chain I
- 50S ribosomal protein L15
- Chain N
- 50S ribosomal protein L20
- Chain O
- 50S ribosomal protein L21
- Chain P
- 50S ribosomal protein L22
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