J5_4U67_007

3D structure

PDB id

4U67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the large ribosomal subunit (50S) of Deinococcus radiodurans containing a three residue insertion in L22

Experimental method

X-RAY DIFFRACTION

Resolution

3.65 Å

Loop

Sequence

AAAAGACC*GGAUAACA*UCGAUGU*GUUCAG*CGGUCU

Length

35 nucleotides

Bulged bases

4U67|1|X|A|2045, 4U67|1|X|A|2427, 4U67|1|X|U|2428, 4U67|1|X|U|2564, 4U67|1|X|U|2588

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U67|1|X|A|2040
4U67|1|X|A|2041
4U67|1|X|A|2042
4U67|1|X|A|2043
4U67|1|X|G|2044
4U67|1|X|A|2045
4U67|1|X|C|2046
4U67|1|X|C|2047
*
4U67|1|X|G|2425
4U67|1|X|G|2426
4U67|1|X|A|2427
4U67|1|X|U|2428
4U67|1|X|A|2429
4U67|1|X|A|2430
4U67|1|X|C|2431
4U67|1|X|A|2432
*
4U67|1|X|U|2479
4U67|1|X|C|2480
4U67|1|X|G|2481
4U67|1|X|A|2482
4U67|1|X|U|2483
4U67|1|X|G|2484
4U67|1|X|U|2485
*
4U67|1|X|G|2562
4U67|1|X|U|2563
4U67|1|X|U|2564
4U67|1|X|C|2565
4U67|1|X|A|2566
4U67|1|X|G|2567
*
4U67|1|X|C|2585
4U67|1|X|G|2586
4U67|1|X|G|2587
4U67|1|X|U|2588
4U67|1|X|C|2589
4U67|1|X|U|2590

Current chains

Chain X

23s RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain B

50S ribosomal protein L3

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32