J5_4U6F_007

3D structure

PDB id

4U6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T-2 toxin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAACAAU*AUAG

Length

35 nucleotides

Bulged bases

4U6F|1|2|A|538, 4U6F|1|2|A|541, 4U6F|1|2|A|544

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U6F|1|2|C|31
4U6F|1|2|U|32
4U6F|1|2|U|33
4U6F|1|2|G|34
4U6F|1|2|U|35
*
4U6F|1|2|A|473
4U6F|1|2|A|474
4U6F|1|2|A|475
4U6F|1|2|U|476
4U6F|1|2|A|477
4U6F|1|2|A|478
4U6F|1|2|C|479
*
4U6F|1|2|G|509
4U6F|1|2|G|510
4U6F|1|2|A|511
4U6F|1|2|A|512
4U6F|1|2|U|513
4U6F|1|2|G|514
4U6F|1|2|A|515
4U6F|1|2|G|516
*
4U6F|1|2|C|536
4U6F|1|2|G|537
4U6F|1|2|A|538
4U6F|1|2|G|539
4U6F|1|2|G|540
4U6F|1|2|A|541
4U6F|1|2|A|542
4U6F|1|2|C|543
4U6F|1|2|A|544
4U6F|1|2|A|545
4U6F|1|2|U|546
*
4U6F|1|2|A|592
4U6F|1|2|U|593
4U6F|1|2|A|594
4U6F|1|2|G|595

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain D3

40S ribosomal protein S23-A

Chain E0

40S ribosomal protein S30-A

Chain S9

40S ribosomal protein S9-A