J5_4U6F_010

3D structure

PDB id

4U6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T-2 toxin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAGUUCCUUUACUACAUGG*CAUGCUUAAAA*UG*CGAAU*AUGGUU

Length

44 nucleotides

Bulged bases

4U6F|1|2|U|128, 4U6F|1|2|U|132, 4U6F|1|2|C|136, 4U6F|1|2|U|137, 4U6F|1|2|A|140, 4U6F|1|2|U|178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U6F|1|2|A|124
4U6F|1|2|U|125
4U6F|1|2|A|126
4U6F|1|2|G|127
4U6F|1|2|U|128
4U6F|1|2|U|129
4U6F|1|2|C|130
4U6F|1|2|C|131
4U6F|1|2|U|132
4U6F|1|2|U|133
4U6F|1|2|U|134
4U6F|1|2|A|135
4U6F|1|2|C|136
4U6F|1|2|U|137
4U6F|1|2|A|138
4U6F|1|2|C|139
4U6F|1|2|A|140
4U6F|1|2|U|141
4U6F|1|2|G|142
4U6F|1|2|G|143
*
4U6F|1|2|C|172
4U6F|1|2|A|173
4U6F|1|2|U|174
4U6F|1|2|G|175
4U6F|1|2|C|176
4U6F|1|2|U|177
4U6F|1|2|U|178
4U6F|1|2|A|179
4U6F|1|2|A|180
4U6F|1|2|A|181
4U6F|1|2|A|182
*
4U6F|1|2|U|203
4U6F|1|2|G|204
*
4U6F|1|2|C|263
4U6F|1|2|G|264
4U6F|1|2|A|265
4U6F|1|2|A|266
4U6F|1|2|U|267
*
4U6F|1|2|A|288
4U6F|1|2|U|289
4U6F|1|2|G|290
4U6F|1|2|G|291
4U6F|1|2|U|292
4U6F|1|2|U|293

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S4

40S ribosomal protein S4-A

Chain S6

40S ribosomal protein S6-A

Chain S8

40S ribosomal protein S8-A