J5_4U6F_016

3D structure

PDB id

4U6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T-2 toxin bound to the yeast 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU

Length

40 nucleotides

Bulged bases

4U6F|1|5|A|2404, 4U6F|1|5|A|2817, 4U6F|1|5|G|2874, 4U6F|1|5|U|2875, 4U6F|1|5|U|2954, 4U6F|1|5|U|2978, 4U6F|1|5|U|2979

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4U6F|1|5|A|2399
4U6F|1|5|G|2400
4U6F|1|5|A|2401
4U6F|1|5|A|2402
4U6F|1|5|G|2403
4U6F|1|5|A|2404
4U6F|1|5|C|2405
4U6F|1|5|C|2406
*
4U6F|1|5|G|2815
4U6F|1|5|G|2816
4U6F|1|5|A|2817
4U6F|1|5|U|2818
4U6F|1|5|A|2819
4U6F|1|5|A|2820
4U6F|1|5|C|2821
4U6F|1|5|U|2822
4U6F|1|5|G|2823
*
4U6F|1|5|C|2867
4U6F|1|5|U|2868
4U6F|1|5|U|2869
4U6F|1|5|C|2870
4U6F|1|5|G|2871
4U6F|1|5|A|2872
4U6F|1|5|U|2873
4U6F|1|5|G|2874
4U6F|1|5|U|2875
4U6F|1|5|C|2876
*
4U6F|1|5|G|2951
4U6F|1|5|G|2952
4U6F|1|5|U|2953
4U6F|1|5|U|2954
4U6F|1|5|U|2955
4U6F|1|5|A|2956
4U6F|1|5|G|2957
*
4U6F|1|5|U|2975
4U6F|1|5|A|2976
4U6F|1|5|G|2977
4U6F|1|5|U|2978
4U6F|1|5|U|2979
4U6F|1|5|U|2980

Current chains

Chain 5

25S ribosomal RNA

Nearby chains

Chain l2

60S ribosomal protein L2-A

Chain l3

60S ribosomal protein L3

Chain l4

60S ribosomal protein L4-A

Chain n9

60S ribosomal protein L29