J5_4V4G_024

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

GACGAAAAGACCC*GGGAUAACAGGC*GCACCUCGAUGUC*GGUUCAG*CGGUCUCUAUC

Length

56 nucleotides

Bulged bases

4V4G|1|HB|A|2427, 4V4G|1|HB|U|2428, 4V4G|1|HB|C|2431, 4V4G|1|HB|C|2475, 4V4G|1|HB|A|2476, 4V4G|1|HB|G|2484, 4V4G|1|HB|U|2564, 4V4G|1|HB|U|2588, 4V4G|1|HB|C|2589, 4V4G|1|HB|U|2592, 4V4G|1|HB|A|2593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|HB|G|2036
4V4G|1|HB|A|2037
4V4G|1|HB|C|2038
4V4G|1|HB|G|2039
4V4G|1|HB|A|2040
4V4G|1|HB|A|2041
4V4G|1|HB|A|2042
4V4G|1|HB|A|2043
4V4G|1|HB|G|2044
4V4G|1|HB|A|2045
4V4G|1|HB|C|2046
4V4G|1|HB|C|2047
4V4G|1|HB|C|2048
*
4V4G|1|HB|G|2424
4V4G|1|HB|G|2425
4V4G|1|HB|G|2426
4V4G|1|HB|A|2427
4V4G|1|HB|U|2428
4V4G|1|HB|A|2429
4V4G|1|HB|A|2430
4V4G|1|HB|C|2431
4V4G|1|HB|A|2432
4V4G|1|HB|G|2433
4V4G|1|HB|G|2434
4V4G|1|HB|C|2435
*
4V4G|1|HB|G|2474
4V4G|1|HB|C|2475
4V4G|1|HB|A|2476
4V4G|1|HB|C|2477
4V4G|1|HB|C|2478
4V4G|1|HB|U|2479
4V4G|1|HB|C|2480
4V4G|1|HB|G|2481
4V4G|1|HB|A|2482
4V4G|1|HB|U|2483
4V4G|1|HB|G|2484
4V4G|1|HB|U|2485
4V4G|1|HB|C|2486
*
4V4G|1|HB|G|2561
4V4G|1|HB|G|2562
4V4G|1|HB|U|2563
4V4G|1|HB|U|2564
4V4G|1|HB|C|2565
4V4G|1|HB|A|2566
4V4G|1|HB|G|2567
*
4V4G|1|HB|C|2585
4V4G|1|HB|G|2586
4V4G|1|HB|G|2587
4V4G|1|HB|U|2588
4V4G|1|HB|C|2589
4V4G|1|HB|U|2590
4V4G|1|HB|C|2591
4V4G|1|HB|U|2592
4V4G|1|HB|A|2593
4V4G|1|HB|U|2594
4V4G|1|HB|C|2595

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain H2

50S ribosomal protein L32

Chain HD

50S ribosomal protein L2

Chain HE

50S ribosomal protein L3

Chain HF

50S ribosomal protein L4

Chain HN

50S ribosomal protein L16

Chain HT

50S ribosomal protein L22