J5_4V4G_037

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CGAUGAAG*CGAAUGG*CCA*UAU*AUG

Length

24 nucleotides

Bulged bases

4V4G|1|DB|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4G|1|DB|C|46
4V4G|1|DB|G|47
4V4G|1|DB|A|48
4V4G|1|DB|U|49
4V4G|1|DB|G|50
4V4G|1|DB|A|51
4V4G|1|DB|A|52
4V4G|1|DB|G|53
*
4V4G|1|DB|C|114
4V4G|1|DB|G|115
4V4G|1|DB|A|116
4V4G|1|DB|A|117
4V4G|1|DB|U|118
4V4G|1|DB|G|119
4V4G|1|DB|G|120
*
4V4G|1|DB|C|127
4V4G|1|DB|C|128
4V4G|1|DB|A|129
*
4V4G|1|DB|U|142
4V4G|1|DB|A|143
4V4G|1|DB|U|144
*
4V4G|1|DB|A|153
4V4G|1|DB|U|154
4V4G|1|DB|G|155

Current chains

Chain DB

23S RIBOSOMAL RNA

Nearby chains

Chain D4

50S ribosomal protein L34