Loop J5_4V4G

3D structure

PDB id: 4V4G (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.
Experimental method: X-RAY DIFFRACTION
Resolution: 11.5 Å

Loop

Sequence: GCCCAAAG*UUGAC*GGG*CGGGCUUAGUGAACC*GAUCAAC
Length: 38 nucleotides
Bulged bases: 4V4G|1|DB|A|2265, 4V4G|1|DB|U|2323, 4V4G|1|DB|G|2361, 4V4G|1|DB|A|2371, 4V4G|1|DB|C|2403, 4V4G|1|DB|A|2405
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V4G|1|DB|G|2261
4V4G|1|DB|C|2262
4V4G|1|DB|C|2263
4V4G|1|DB|C|2264
4V4G|1|DB|A|2265
4V4G|1|DB|A|2266
4V4G|1|DB|A|2267
4V4G|1|DB|G|2268
*
4V4G|1|DB|U|2322
4V4G|1|DB|U|2323
4V4G|1|DB|G|2324
4V4G|1|DB|A|2325
4V4G|1|DB|C|2326
*
4V4G|1|DB|G|2349
4V4G|1|DB|G|2350
4V4G|1|DB|G|2351
*
4V4G|1|DB|C|2360
4V4G|1|DB|G|2361
4V4G|1|DB|G|2362
4V4G|1|DB|G|2363
4V4G|1|DB|C|2364
4V4G|1|DB|U|2365
4V4G|1|DB|U|2366
4V4G|1|DB|A|2367
4V4G|1|DB|G|2368
4V4G|1|DB|U|2369
4V4G|1|DB|G|2370
4V4G|1|DB|A|2371
4V4G|1|DB|A|2372
4V4G|1|DB|C|2373
4V4G|1|DB|C|2374
*
4V4G|1|DB|G|2400
4V4G|1|DB|A|2401
4V4G|1|DB|U|2402
4V4G|1|DB|C|2403
4V4G|1|DB|A|2404
4V4G|1|DB|A|2405
4V4G|1|DB|C|2406

Current chains

Chain DB: 23S RIBOSOMAL RNA

Nearby chains

Chain D1: 50S ribosomal protein L31
Chain D3: 50S ribosomal protein L33
Chain D5: 50S ribosomal protein L35
Chain DM: 50S ribosomal protein L15
Chain DX: 50S ribosomal protein L27

J5_4V4G_039